Why Outlook Deletes Emails Automatically and How to Stop It?

Have you ever opened Outlook only to find that your emails have mysteriously disappeared from your inbox, or noticed that older emails are automatically deleted after 30 or 90 days? You’re not alone. Many users face this frustrating issue, “why Outlook deletes emails automatically?”, where Outlook seems to delete emails on its own. This can cause serious problems such as missing folders, lost communications, or even permanent data loss.
In this guide, we’ll walk you through the most common reasons why Outlook may be deleting emails automatically. From AutoArchive settings to email rules and deleted items folder configurations, there are several potential causes. Whether you use Outlook for personal or professional purposes, understanding these causes is essential. You’ll learn how to take back control of your inbox, stop automatic deletions, and ensure your important emails remain safe and accessible.
What Are the Reasons for Outlook Deleting Emails Automatically?
Several settings and configurations within Outlook can cause emails to be deleted automatically, often without clear warnings. Here are the most common reasons why Outlook deletes emails automatically:
- AutoArchive Settings – Outlook’s AutoArchive feature is designed to manage older emails by moving or deleting them after a set period. However, if it’s not properly configured, it may automatically remove emails from your inbox without your knowledge.
- Custom Email Rules – Users often create custom rules to organize incoming mail. But these rules can sometimes include a delete action, either unintentionally or due to outdated logic. This can result in important emails being automatically moved to the Deleted Items folder or removed entirely.
- Server-Side Deletions – In some cases, the mail server itself can delete messages, especially if you’re using an Exchange or IMAP account. These deletions may not always be reflected immediately in the Outlook desktop client, causing confusion or perceived data loss.
- Junk or Phishing Filters – Outlook automatically moves suspicious emails to the Junk or Spam folder. These folders are often set to empty after a certain number of days, meaning your emails can be deleted if not reviewed in time.
- Third-Party Add-ins and Aggressive Filters – Some third-party add-ins or security tools may come with strict filtering policies that lead to automatic deletion of emails, especially those flagged as suspicious.
- Deleted Items Folder Auto-Cleanup – Outlook can be configured to automatically empty the Deleted Items folder when the application is closed. This setting can permanently delete any emails that were mistakenly moved to that folder.
- IMAP or Exchange Sync Issues – When Outlook is configured with IMAP or Exchange accounts, a failure to connect to the server may result in missing emails. This can occur due to deletions made on the server, incorrect folder synchronization, or delays in syncing.
Why Outlook Deletes Emails Automatically (And How to Stop It)
If emails are mysteriously disappearing from your Outlook inbox, you’re not alone. Outlook has several built-in features and settings that can result in automatic email deletion, often without warning. Below is a breakdown of the most common errors and how to stop them.
AutoArchive: The Silent Email Thief
One of the most overlooked causes is the AutoArchive feature. While designed to manage older emails, it can silently move or delete messages based on age or folder rules, without any alerts.
How to Check and Disable AutoArchive:
- Open Outlook.

- Click File > Options.

- Select Advanced.

- Under the AutoArchive section, click AutoArchive Settings.
- Review the schedule and uncheck options like “Permanently delete old items.”

Rules Running Wild
Outlook rules help organize emails, but poorly configured or outdated rules can automatically delete emails or skip your inbox altogether.
To Review or Edit Rules:
- Go to File > Manage Rules & Alerts.

- Look for rules with actions like “Delete,” “Move to folder,” or “Permanently delete.”
- Disable or adjust any suspicious rules.
- Don’t forget to check for server-side rules (visible only via Outlook Web App or Exchange Admin).
Junk Email Filter Misfires
Outlook’s built-in spam filter may incorrectly flag legitimate messages as junk. Emails in the Junk Email folder are typically deleted after 10 days by default.
How to Adjust Junk Filter Settings:
- Go to the Home tab and click Junk > Junk E-mail Options.

- Change the filter level to Low or No automatic filtering.

- Uncheck any settings that automatically delete suspected junk or phishing messages.
Deleted Items Settings & Auto-Empty on Exit
Outlook can be set to automatically empty the Deleted Items folder when you close the application. If this is enabled, anything in that folder will be permanently deleted.
To Disable Auto-Empty on Exit:
- Click File > Options > Advanced.

- Scroll to the Outlook Start and Exit section.

- Uncheck the box that says “Empty Deleted Items folder when exiting Outlook.”
Sync Issues, Account Settings, or Storage Limits
If you’re using IMAP or Exchange, sync delays or account limits might cause emails to disappear or never appear in Outlook.
To Adjust Sync Settings:
Click File > Account Settings > Account Settings.

Select your account, then click Change.

Adjust the “Mail to keep offline” slider to store more emails locally.
Add-ins, Corrupted Profiles, or Conflicts
Third-party add-ins or a corrupted Outlook profile may interfere with email delivery or cause auto-deletion.
How to Start Outlook in Safe Mode & Remove Add-ins:
- Press Win + R, type Outlook.exe /safe

- Then press Enter to open Outlook in safe mode.

- In Outlook, go to File > Options > Add-ins.

- At the bottom, select COM Add-ins > click Go.

- Deselect or remove any suspicious or unused add-ins.

Server-Side Features & “Ignore Conversation”
Outlook’s Ignore Conversation feature can send entire threads, including future replies, directly to the Deleted Items folder.
How to Turn It Off:
- Right-click any ignored conversation.
- Select “Ignore” again to toggle it off.

Additionally, some email deletions are triggered by Microsoft 365 retention policies configured by your organization’s administrator. If you’re on a business account:
- Contact your IT administrator to review any retention or deletion policies in the Microsoft 365 Compliance Center.
If the manual methods don’t resolve the issue or if important emails have already been lost, we recommend using a reliable OST Converter tool. This type of software can convert individual or multiple OST files, even if they are corrupted or inaccessible. The Advanced OST File Converter tool also offers over 20+ saving options, including conversion to PST format, which can be easily imported back into Outlook for seamless restoration.
- Convert OST to multiple formats, including PST, PDF, EML, MBOX, and more.
- Features a simple and intuitive interface, making it suitable for both beginners and professionals.
- Supports direct import of OST files to platforms like Microsoft 365, IMAP, Zimbra, and Thunderbird.
- Allows you to select specific mailbox folders for targeted recovery.
- Capable of restoring corrupted, oversized, inaccessible, or dismounted OST files with high accuracy.
Final Thoughts!
In this technical guide, we’ve covered multiple methods to fix the issue of Outlook automatically deleting emails, from checking AutoArchive settings to managing rules and junk filters. While manual fixes are a good starting point, if they don’t resolve the issue, it could indicate file corruption.
In such cases, an OST to PST Converter Tool is the most effective alternative. It not only restores corrupted or deleted Outlook data but also offers a range of export and migration options. Download the software, test its performance, and explore its advanced features to keep your Outlook data safe and fully recoverable.
